Pre-Symposium Course – Program

August 12
Mass Spectrometry based Proteomics
8:30-9:00 Registration
9:00-10:00 Proteomics: science facts and science fiction
Juan Calvete, CSIC-Spain
10:00-11:00 Community standards for data formats and reporting of data
Juan Calvete, CSIC-Spain
11:00-11:20 Coffee break
11:20-13:00 Mass spectrometry: Principles and Strategies
Marcos Eberlin, Universidad de Campinas, Brasil
13:00-14:30 Lunch
14:30-16:30 Analysis of post-translational modifications by mass spectrometry
Benjamin Garcia, University of Pennsylvania, USA
16:30-17:00 Coffee break
17:00-19:30 Protein Identification using any of the search engines available on the Internet. You will need to bring a WiFi enabled laptop, or work as a pair with someone who has one. There will be a variety of PMF and MS/MS search exercises and, after each exercise, it will discussed as a group.
Luis Mendoza, Institute of System Biology, Seattle, USA

August 13
Informatics for proteomics

Luis Mendoza, Institute of System Biology, Seattle, USA
8:30-10:00 Proteomics Search Engines and integrated platforms
10:00-11:00 Trans-Proteomic Pipeline
11:00-11:20 Coffee break
11:20-14:00 Trans-Proteomic Pipeline
14:00-15:00 Lunch
15:00-16:30 Quantitative proteomics
Mathias Selbach, Max Delbrück Center for Molecular Medicine, Berlin, Germany.